Embryo methylation profiling in marmosets - SRA

ERX12099509: Embryo methylation profiling in marmosets
2 ILLUMINA (Illumina HiSeq 4000) runs: 4.5M spots, 337.6M bases, 126Mb downloads

Design: Embryo methylation profiling in marmosets

Submitted by: EBI (European Bioinformatics Institute)

Study: Embryo methylation profiling in marmosets

PRJEB73611 • ERP158382 • All experiments • All runs

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Here we perform Bisulfite sequencing (BS-seq) on marmoset post-implantation embryos following laser capture micro dissection to capture methylation profiles of post-implantation tissues. We also perform single-cell BS-seq on pre-implantation marmoset embryos from four-cell to the compacted morula stages.

Sample: CME25A7881202_1.fastq.gz

SAMEA115381682 • ERS18401202 • All experiments • All runs

Organism: Callithrix jacchus

Library:

Name: CME25A7881202_1.fastq.gz_s

Instrument: Illumina HiSeq 4000

Strategy: Bisulfite-Seq

Source: GENOMIC SINGLE CELL

Selection: RANDOM

Layout: SINGLE

Construction protocol: Single cell or near single cell genome bisulfite sequencing was conducted on postimplantation embryos following laser capture micro-dissection. Single cell bisulfites sequencing was conducted on pre-implantation following isolation via mouth pipetting. Genomic DNA was extracted using a Monarch Genomic DNA Purification Kit (NEB). Standard library construction protocols were used.

Runs: 2 runs, 4.5M spots, 337.6M bases, 126Mb

Run	# of Spots	# of Bases	Size	Published
ERR12725400	2,250,406	168.8M	61.8Mb	2024-09-22
ERR12725401	2,250,406	168.8M	64.2Mb	2024-09-23

ID:: 35317233

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